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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
34
single cell RNA-seq
22
snATAC-seq
20
ATAC-seq
20
total RNA-seq
Assay category
94
DNA binding
54
Transcription
42
DNA accessibility
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
94
bam
94
fastq
92
bed narrowPeak
92
bigWig
54
zippedFastqFolder
50
bigBed narrowPeak
16
bed bed3+
1
txt
Organism
190
Homo sapiens
Biosample type
90
tissue
54
primary cell
43
in vitro differentiated cells
3
stem cell
Organ
pancreas
103
liver
99
epithelium
13
embryo
2
musculature of body
Project
136
AMP
54
HPAP
Genome assembly (visualization)
98
hg19
77
GRCh38
Lab
96
AMP-T2D consortium
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
190 results
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Clear Filters
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
total RNA-seq
tissue
liver
38
20
20
right lobe of liver
10
skeletal muscle tissue
1
1
primary cell
Langerhans cell
33
21
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
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