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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
91
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
42
transcription factor
29
histone
29
histone modification
25
control
15
narrow histone mark
14
broad histone mark
5
nucleotide modification
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2023
1
August, 2022
Available data
97
bam
91
fastq
75
bigWig
72
bed narrowPeak
51
bigBed narrowPeak
13
bed bed3+
4
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
107
Homo sapiens
Biosample type
52
tissue
43
in vitro differentiated cells
6
cell line
6
primary cell
stem cell
Organ
63
liver
25
epithelium
13
embryo
10
pancreas
6
connective tissue
Project
107
AMP
Genome assembly (visualization)
80
GRCh38
80
hg19
Lab
97
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
9
inconsistent control read length
biosample_type!
stem cell
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
liver
38
right lobe of liver
10
islet of Langerhans
4
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
1
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