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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
49
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
transcription factor
29
histone
29
histone modification
25
control
15
narrow histone mark
14
broad histone mark
5
nucleotide modification
4
RNA binding protein
3
chromatin remodeller
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
61
October, 2018
60
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
49
December, 2017
47
September, 2023
39
February, 2018
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
December, 2018
7
January, 2018
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2023
1
August, 2022
Available data
55
bam
49
fastq
33
bigWig
30
bed narrowPeak
18
bigBed narrowPeak
13
bed bed3+
4
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
65
Homo sapiens
Biosample type
32
in vitro differentiated cells
21
tissue
6
cell line
6
primary cell
stem cell
Organ
30
liver
23
epithelium
10
embryo
10
pancreas
6
connective tissue
Project
65
AMP
Genome assembly (visualization)
38
GRCh38
38
hg19
Lab
55
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
biosample_type!
stem cell
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
65 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte
13
pancreatic endoderm
6
Hepatic endoderm
4
Posterior foregut
3
definitive endodermal cell
3
+ See 1 more…
tissue
liver
9
right lobe of liver
8
islet of Langerhans
4
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
1
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