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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
10
MeRIP-seq
1
ATAC-seq
Assay category
44
DNA binding
Transcription
1
DNA accessibility
Target of assay
26
control
14
histone
14
histone modification
9
narrow histone mark
9
transcription factor
5
broad histone mark
5
nucleotide modification
Date released
280
August, 2017
217
May, 2021
214
October, 2019
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
111
February, 2023
94
November, 2017
49
March, 2020
44
December, 2017
41
July, 2019
41
November, 2019
40
May, 2024
32
September, 2018
29
October, 2018
24
February, 2018
23
May, 2019
17
October, 2017
16
April, 2019
16
January, 2021
14
November, 2018
11
May, 2023
11
November, 2020
10
April, 2020
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
4
January, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
96
bam
94
fastq
74
bed narrowPeak
73
bigWig
bigBed narrowPeak
16
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
55
Homo sapiens
Biosample type
29
in vitro differentiated cells
16
tissue
6
cell line
3
stem cell
1
primary cell
Organ
13
embryo
13
liver
11
epithelium
10
pancreas
1
connective tissue
Project
55
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
45
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
files.file_type!
bigBed narrowPeak
assay_slims!
Transcription
BIOSAMPLE
ASSAY
55 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
Hepatic endoderm
4
+ See 1 more…
tissue
liver
9
islet of Langerhans
4
right lobe of liver
3
cell line
EndoC_BH1
6
stem cell
hESC
3
primary cell
osteoblast
1
See all biosamples
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