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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
4
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
Assay category
40
DNA binding
4
Transcription
1
DNA accessibility
Target of assay
21
control
12
histone
12
histone modification
9
transcription factor
7
narrow histone mark
5
broad histone mark
2
nucleotide modification
Date released
587
February, 2021
369
August, 2017
333
May, 2020
316
August, 2021
309
May, 2021
221
October, 2019
200
May, 2022
194
February, 2023
162
July, 2018
104
July, 2019
94
November, 2017
59
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
December, 2017
40
May, 2024
39
February, 2018
39
November, 2019
31
October, 2018
24
February, 2020
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
9
January, 2019
9
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
June, 2019
4
October, 2022
2
June, 2018
1
August, 2022
Available data
96
bam
90
fastq
75
bigWig
72
bed narrowPeak
bigBed narrowPeak
16
bed bed3+
4
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
49
Homo sapiens
Biosample type
25
in vitro differentiated cells
16
tissue
5
primary cell
3
stem cell
Organ
13
liver
9
embryo
5
connective tissue
4
pancreas
1
epithelium
Project
49
AMP
Genome assembly (visualization)
30
GRCh38
30
hg19
Lab
45
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
bigBed narrowPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
hepatocyte
1
tissue
liver
9
islet of Langerhans
4
right lobe of liver
3
primary cell
osteoblast
4
1
stem cell
hESC
3
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