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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
19
total RNA-seq
10
Hi-C
10
MeRIP-seq
5
ATAC-seq
3
ChIP-seq
1
DNase-seq
Assay category
19
Transcription
10
3D chromatin structure
6
DNA accessibility
3
DNA binding
Target of assay
5
control
5
nucleotide modification
3
histone
3
histone modification
3
narrow histone mark
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
0
December, 2017
Available data
116
bam
97
bigWig
fastq
77
bed narrowPeak
51
bigBed narrowPeak
49
tsv
16
bed bed3+
12
bedpe bed3+
10
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
80
Homo sapiens
Biosample type
44
tissue
17
cell line
8
in vitro differentiated cells
7
primary cell
4
stem cell
Organ
24
pancreas
12
epithelium
8
connective tissue
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
73
AMP
7
T1D
Genome assembly (visualization)
38
hg19
22
GRCh38
Lab
70
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
23
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
80 results
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pCHi-C
total RNA-seq
Hi-C
MeRIP-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
islet of Langerhans
2
4
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
6
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
primary cell
osteoblast
4
1
1
endothelial cell of umbilical vein
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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