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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
10
MeRIP-seq
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
94
DNA binding
2
DNA accessibility
Target of assay
42
transcription factor
31
histone
31
histone modification
26
control
16
narrow histone mark
15
broad histone mark
5
nucleotide modification
4
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
40
May, 2024
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
96
bam
94
fastq
74
bed narrowPeak
73
bigWig
51
bigBed narrowPeak
16
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
106
Homo sapiens
Biosample type
52
tissue
43
in vitro differentiated cells
6
cell line
3
stem cell
2
primary cell
Organ
63
liver
25
epithelium
13
embryo
10
pancreas
2
connective tissue
Project
106
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
96
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
December, 2018
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
tissue
liver
38
right lobe of liver
10
islet of Langerhans
4
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
EndoC_BH1
6
stem cell
hESC
3
primary cell
osteoblast
1
1
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