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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
10
MeRIP-seq
9
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
153
DNA binding
9
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
84
transcription factor
38
histone
38
histone modification
34
control
19
broad histone mark
19
narrow histone mark
12
RNA binding protein
11
chromatin remodeller
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
164
bam
159
fastq
133
bigWig
125
bed narrowPeak
102
bigBed narrowPeak
16
bed bed3+
9
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
175
Homo sapiens
Biosample type
66
tissue
57
cell line
43
in vitro differentiated cells
6
primary cell
3
stem cell
Organ
69
liver
45
blood
45
bodily fluid
25
epithelium
14
spleen
13
embryo
10
pancreas
6
connective tissue
Project
175
AMP
Genome assembly (visualization)
139
GRCh38
139
hg19
Lab
165
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent control
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
175 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
liver
38
spleen
14
right lobe of liver
10
islet of Langerhans
4
cell line
GM12878
45
EndoC_BH1
6
HepG2
5
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
primary cell
osteoblast
4
1
1
stem cell
hESC
3
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