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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
101
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
45
transcription factor
31
histone
31
histone modification
30
control
16
narrow histone mark
15
broad histone mark
5
nucleotide modification
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
107
bam
102
fastq
80
bigWig
77
bed narrowPeak
54
bigBed narrowPeak
16
bed bed3+
4
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
118
Homo sapiens
Biosample type
59
tissue
43
in vitro differentiated cells
7
cell line
6
primary cell
3
stem cell
Organ
64
liver
27
blood
bodily fluid
25
epithelium
13
embryo
10
pancreas
7
spleen
6
connective tissue
Project
118
AMP
Genome assembly (visualization)
86
GRCh38
86
hg19
Lab
108
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
liver
38
right lobe of liver
10
spleen
7
islet of Langerhans
4
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
EndoC_BH1
6
HepG2
1
primary cell
osteoblast
4
1
1
stem cell
hESC
3
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