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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
62
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
42
transcription factor
30
histone
30
histone modification
broad histone mark
15
narrow histone mark
5
control
4
RNA binding protein
3
chromatin remodeller
Date released
568
February, 2021
235
November, 2017
232
May, 2021
207
May, 2020
202
June, 2019
200
August, 2017
164
July, 2018
157
October, 2019
98
August, 2021
79
July, 2019
79
November, 2018
62
December, 2017
55
September, 2018
51
November, 2019
49
April, 2018
38
May, 2019
35
February, 2023
30
December, 2018
28
October, 2018
27
April, 2019
23
February, 2018
22
January, 2019
20
May, 2024
16
March, 2020
12
May, 2023
9
October, 2017
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
68
bam
62
bigWig
62
fastq
59
bed narrowPeak
41
bigBed narrowPeak
11
bed bed3+
4
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
68
Homo sapiens
Biosample type
33
tissue
27
in vitro differentiated cells
6
primary cell
2
stem cell
Organ
40
liver
9
epithelium
8
embryo
6
connective tissue
Project
68
AMP
Genome assembly (visualization)
68
GRCh38
68
hg19
Lab
68
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
6
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
68 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
liver
29
right lobe of liver
4
in vitro differentiated cells
hepatocyte
7
pancreatic endoderm
6
Posterior foregut
4
definitive endodermal cell
4
primitive gut cell
4
+ See 1 more…
primary cell
osteoblast
4
1
1
stem cell
hESC
2
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