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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
8
ATAC-seq
Assay category
53
DNA binding
8
DNA accessibility
Target of assay
24
control
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
transcription factor
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
111
fastq
109
bam
86
bigWig
84
bed narrowPeak
bigBed narrowPeak
15
bed bed3+
14
tagAlign
4
bed broadPeak
Organism
61
Homo sapiens
Biosample type
29
in vitro differentiated cells
29
tissue
3
stem cell
Organ
13
embryo
13
liver
10
brain
5
epithelium
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
61
AMP
Genome assembly (visualization)
35
GRCh38
34
hg19
Lab
60
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
61 results
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Clear Filters
ChIP-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
Hepatic endoderm
4
+ See 1 more…
tissue
brain
9
liver
9
body of pancreas
4
right lobe of liver
3
cerebellum (Hemisphere)
1
+ See 3 more…
stem cell
hESC
3
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