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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
90
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
42
transcription factor
31
histone
31
histone modification
26
control
16
narrow histone mark
15
broad histone mark
5
nucleotide modification
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
96
bam
90
fastq
73
bigWig
70
bed narrowPeak
47
bigBed narrowPeak
16
bed bed3+
4
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
106
Homo sapiens
Biosample type
50
tissue
41
in vitro differentiated cells
6
cell line
6
primary cell
3
stem cell
Organ
59
liver
23
epithelium
13
embryo
10
pancreas
6
connective tissue
Project
106
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
96
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
liver
37
right lobe of liver
9
islet of Langerhans
4
in vitro differentiated cells
hepatocyte
13
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
1
stem cell
hESC
3
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