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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
8
ATAC-seq
Assay category
105
DNA binding
8
DNA accessibility
Target of assay
43
histone
43
histone modification
42
transcription factor
25
broad histone mark
24
control
18
narrow histone mark
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
107
fastq
105
bam
82
bigWig
80
bed narrowPeak
52
bigBed narrowPeak
15
bed bed3+
14
tagAlign
4
bed broadPeak
Organism
113
Homo sapiens
Biosample type
69
tissue
41
in vitro differentiated cells
3
stem cell
Organ
59
liver
17
epithelium
16
brain
13
embryo
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
113
AMP
Genome assembly (visualization)
87
GRCh38
86
hg19
Lab
112
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
37
brain
15
right lobe of liver
9
body of pancreas
4
cerebellum (Hemisphere)
1
+ See 3 more…
in vitro differentiated cells
hepatocyte
13
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
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