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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
1
total RNA-seq
Assay category
52
DNA binding
11
DNA accessibility
4
Transcription
Target of assay
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
52
bam
52
fastq
30
bed narrowPeak
30
bigWig
17
bigBed narrowPeak
15
bed bed3+
Organism
67
Homo sapiens
Biosample type
32
in vitro differentiated cells
32
tissue
3
stem cell
Organ
30
liver
17
epithelium
14
kidney
10
embryo
1
adipose tissue
1
connective tissue
Project
67
AMP
Genome assembly (visualization)
47
GRCh38
36
hg19
Lab
53
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
in vitro differentiated cells
hepatocyte
13
pancreatic endoderm
6
Hepatic endoderm
4
Posterior foregut
3
definitive endodermal cell
3
+ See 1 more…
tissue
kidney
11
3
liver
9
right lobe of liver
8
adipose tissue
1
stem cell
hESC
3
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