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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
32
pCHi-C
11
Hi-C
11
total RNA-seq
4
ATAC-seq
Assay category
34
DNA binding
11
3D chromatin structure
11
Transcription
4
DNA accessibility
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
45
bam
45
bigWig
43
tsv
35
fastq
30
bed narrowPeak
30
bigBed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
Organism
92
Homo sapiens
Biosample type
43
tissue
36
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
27
blood
27
bodily fluid
8
spleen
7
heart
7
pancreas
5
musculature of body
4
blood vessel
4
liver
4
vasculature
3
epithelium
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
92
AMP
7
T1D
Genome assembly (visualization)
57
hg19
41
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
1
inconsistent control
month_released!
January, 2021
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
pCHi-C
Hi-C
total RNA-seq
ATAC-seq
tissue
spleen
7
1
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
GM12878
27
EndoC_BH1
2
early embryonic cell
2
HepG2
1
MCF-7
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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