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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
34
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
single cell RNA-seq
Assay category
DNA accessibility
94
Transcription
34
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
111
fastq
34
bam
30
bed narrowPeak
30
bigBed narrowPeak
30
bigWig
4
tsv
4
txt
Organism
134
Homo sapiens
Biosample type
76
primary cell
34
cell line
21
tissue
4
in vitro differentiated cells
Organ
43
pancreas
40
epithelium
27
blood
27
bodily fluid
7
spleen
4
bone element
4
connective tissue
4
eye
4
skeleton
1
heart
1
liver
Project
76
HPAP
49
AMP
10
T1D
Genome assembly (visualization)
30
GRCh38
30
hg19
Lab
76
Klaus Kaestner, Upenn
49
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent control
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
135 results
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Clear Filters
total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
cell line
GM12878
27
EndoC_BH1
3
2
1
HepG2
1
tissue
spleen
7
islet of Langerhans
5
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
+ See 4 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
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