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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
43
single cell RNA-seq
34
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
9
ATAC-seq
9
Hi-C
2
FAIRE-seq
Assay category
121
Transcription
34
DNA binding
27
DNA methylation
11
DNA accessibility
9
3D chromatin structure
Target of assay
28
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
118
bigWig
116
bam
76
fastq
65
tsv
37
bed narrowPeak
32
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
19
zippedFastqFolder
4
bed bed3+
4
hdf5
Organism
202
Homo sapiens
Biosample type
90
primary cell
84
tissue
28
cell line
Organ
32
epithelium
27
blood
27
bodily fluid
25
heart
25
pancreas
18
brain
18
connective tissue
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
11
liver
10
musculature of body
7
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
143
AMP
59
HPAP
Genome assembly (visualization)
121
hg19
112
GRCh38
Lab
143
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
202 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
FAIRE-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 23 more…
tissue
heart left ventricle
2
1
4
2
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 27 more…
cell line
GM12878
27
HepG2
1
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