Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
total RNA-seq
106
ATAC-seq
84
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
9
Hi-C
6
single cell RNA-seq
2
FAIRE-seq
1
pCHi-C
Assay category
258
Transcription
108
DNA accessibility
84
DNA binding
27
DNA methylation
9
3D chromatin structure
Target of assay
30
control
28
transcription factor
27
histone
27
histone modification
27
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
402
bam
378
bigWig
257
tsv
64
bed narrowPeak
50
tagAlign
38
fastq
32
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
487
Homo sapiens
Biosample type
277
tissue
181
primary cell
29
cell line
Organ
205
liver
27
blood
27
bodily fluid
25
heart
18
brain
18
connective tissue
14
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
musculature of body
7
pancreas
7
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
442
AMP
45
T1D
Genome assembly (visualization)
384
hg19
319
GRCh38
Lab
442
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
487 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
pCHi-C
tissue
liver
145
50
1
heart left ventricle
2
2
1
4
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 52 more…
cell line
GM12878
27
HepG2
1
1
See all biosamples
Download