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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
10
MeRIP-seq
5
ATAC-seq
4
total RNA-seq
2
Hi-C
1
DNase-seq
Assay category
34
DNA binding
6
DNA accessibility
4
Transcription
2
3D chromatin structure
Target of assay
28
transcription factor
9
control
5
nucleotide modification
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
41
bam
36
fastq
35
bigWig
32
bed narrowPeak
31
bigBed narrowPeak
4
tsv
2
bed broadPeak
1
bed bed3+
1
bedpe
1
bigBed broadPeak
1
hic
Organism
56
Homo sapiens
Biosample type
34
cell line
16
tissue
6
primary cell
Organ
27
blood
27
bodily fluid
15
pancreas
7
spleen
6
connective tissue
6
epithelium
1
liver
Project
56
AMP
Genome assembly (visualization)
39
hg19
38
GRCh38
Lab
41
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
total RNA-seq
Hi-C
DNase-seq
cell line
GM12878
27
EndoC_BH1
6
HepG2
1
tissue
islet of Langerhans
4
4
1
spleen
7
primary cell
osteoblast
1
4
1
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