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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
154
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
33
transcription factor
32
control
7
RNA binding protein
5
nucleotide modification
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
160
bam
132
bigWig
129
bed narrowPeak
128
bigBed narrowPeak
35
fastq
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
171
Homo sapiens
Biosample type
126
tissue
34
cell line
11
primary cell
Organ
50
blood vessel
50
vasculature
28
brain
27
blood
27
bodily fluid
21
heart
12
pancreas
11
epithelium
7
limb
7
musculature of body
7
spleen
6
connective tissue
5
artery
5
kidney
1
liver
Project
171
AMP
Genome assembly (visualization)
133
hg19
132
GRCh38
Lab
161
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
171 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 8 more…
cell line
GM12878
27
EndoC_BH1
6
HepG2
1
primary cell
osteoblast
4
1
1
kidney epithelial cell
5
See all biosamples
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