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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
8
ATAC-seq
1
Hi-C
Assay category
169
DNA binding
8
DNA accessibility
1
3D chromatin structure
Target of assay
104
histone
104
histone modification
68
broad histone mark
36
narrow histone mark
33
transcription factor
30
control
7
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
169
bam
141
bigWig
139
bed narrowPeak
133
bigBed narrowPeak
52
fastq
14
tagAlign
4
bed broadPeak
Organism
178
Homo sapiens
Biosample type
145
tissue
28
cell line
5
primary cell
Organ
50
blood vessel
50
vasculature
44
brain
27
blood
27
bodily fluid
21
heart
8
spleen
7
limb
7
musculature of body
7
pancreas
5
artery
5
epithelium
5
kidney
1
adipose tissue
1
connective tissue
1
liver
Project
178
AMP
Genome assembly (visualization)
140
GRCh38
140
hg19
Lab
177
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
178 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
tissue
ascending aorta
16
thoracic aorta
16
brain
15
temporal lobe
15
angular gyrus
13
+ See 11 more…
cell line
GM12878
27
HepG2
1
primary cell
kidney epithelial cell
5
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