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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
27
ChIP-seq
26
total RNA-seq
22
snATAC-seq
1
Hi-C
Assay category
99
DNA accessibility
60
Transcription
41
DNA methylation
27
DNA binding
1
3D chromatin structure
Target of assay
25
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
65
bed narrowPeak
52
fastq
51
bam
47
bigWig
27
bigBed narrowPeak
7
txt
1
bed bed3+
Organism
228
Homo sapiens
Biosample type
134
primary cell
66
tissue
28
cell line
Organ
104
pancreas
80
epithelium
41
liver
27
blood
27
bodily fluid
spleen
2
musculature of body
Project
134
HPAP
94
AMP
Genome assembly (visualization)
66
hg19
27
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
30
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
organ_slims!
spleen
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
cell line
GM12878
27
HepG2
1
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