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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
26
ATAC-seq
total RNA-seq
3
Hi-C
Assay category
47
DNA binding
26
DNA accessibility
3
3D chromatin structure
Target of assay
29
transcription factor
10
histone
10
histone modification
6
broad histone mark
6
control
4
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
73
bam
67
bed narrowPeak
41
bigWig
35
fastq
30
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
76
Homo sapiens
Biosample type
43
cell line
28
tissue
5
in vitro differentiated cells
Organ
35
pancreas
27
blood
27
bodily fluid
15
epithelium
7
spleen
1
adipose tissue
1
connective tissue
1
liver
Project
76
AMP
Genome assembly (visualization)
69
hg19
67
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
1
inconsistent control
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
cell line
GM12878
27
EndoC_BH1
13
1
1
HepG2
1
tissue
islet of Langerhans
19
1
spleen
7
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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