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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
27
ATAC-seq
24
total RNA-seq
10
MeRIP-seq
3
Hi-C
1
DNase-seq
Assay category
47
DNA binding
28
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
29
transcription factor
11
control
10
histone
10
histone modification
6
broad histone mark
5
nucleotide modification
4
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
99
bam
69
bed narrowPeak
66
bigWig
35
fastq
31
bigBed narrowPeak
24
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
112
Homo sapiens
Biosample type
51
tissue
50
cell line
6
primary cell
5
in vitro differentiated cells
Organ
65
pancreas
27
blood
27
bodily fluid
22
epithelium
7
connective tissue
7
spleen
1
adipose tissue
1
liver
Project
112
AMP
Genome assembly (visualization)
95
hg19
93
GRCh38
Lab
102
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
112 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
19
19
4
1
spleen
7
adipose tissue(adipose white tissue)
1
cell line
GM12878
27
EndoC_BH1
13
1
1
6
1
HepG2
1
primary cell
osteoblast
1
4
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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