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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
80
ChIP-seq
8
ATAC-seq
1
Hi-C
Assay category
195
DNA accessibility
80
DNA binding
1
3D chromatin structure
Target of assay
32
transcription factor
31
histone
31
histone modification
18
broad histone mark
15
control
13
narrow histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
267
bam
254
bigWig
252
bed narrowPeak
246
bigBed narrowPeak
191
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
52
fastq
14
tagAlign
Organism
276
Homo sapiens
Biosample type
193
tissue
55
primary cell
28
cell line
Organ
81
kidney
46
brain
43
musculature of body
35
heart
32
limb
27
blood
27
bodily fluid
20
epithelium
19
connective tissue
18
ureter
9
pancreas
8
spleen
7
eye
7
vasculature
5
blood vessel
3
liver
2
adipose tissue
2
artery
Project
276
AMP
Genome assembly (visualization)
254
GRCh38
230
hg19
Lab
275
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
26
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
276 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
brain
12
15
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
cell line
GM12878
27
HepG2
1
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