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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
45
total RNA-seq
36
pCHi-C
26
ATAC-seq
16
Hi-C
10
DNase-seq
1
FAIRE-seq
Assay category
279
DNA binding
45
Transcription
37
DNA accessibility
16
3D chromatin structure
Target of assay
199
histone
199
histone modification
144
narrow histone mark
55
broad histone mark
43
control
35
transcription factor
7
recombinant protein
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
300
bam
257
bigWig
222
bed narrowPeak
100
bigBed narrowPeak
61
tsv
49
tagAlign
35
fastq
15
bedpe bed3+
14
hic
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
2
ibed
1
hdf5
1
tagAlign bed3+
1
tar
Organism
413
Homo sapiens
Biosample type
289
tissue
69
cell line
35
primary cell
16
in vitro differentiated cells
4
stem cell
Organ
88
brain
69
limb
51
blood vessel
51
vasculature
42
nerve
41
epithelium
32
kidney
32
pancreas
27
blood
27
bodily fluid
26
artery
22
vein
21
eye
15
heart
11
liver
8
spleen
6
connective tissue
5
gonad
5
musculature of body
5
ovary
2
adipose tissue
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
406
AMP
7
T1D
Genome assembly (visualization)
279
hg19
253
GRCh38
Lab
413
AMP-T2D consortium
Audit category:
40
inconsistent ontology term
1
audit script error
1
inconsistent control
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
413 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
Hi-C
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
23
16
4
15
tibial nerve
35
4
1
2
tibial artery
23
1
2
liver
5
2
1
1
heart
5
2
1
+ See 96 more…
cell line
GM12878
27
Panc1
13
1
1
EndoC_BH1
1
2
2
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
+ See 7 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
2
1
2
cardiac precursors (cardiac muscle cell)
1
1
1
lymphocyte of B lineage (iPSC)
1
1
1
adipocyte
2
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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