Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
46
total RNA-seq
40
single cell RNA-seq
25
ATAC-seq
10
DNase-seq
6
Hi-C
4
pCHi-C
1
FAIRE-seq
Assay category
276
DNA binding
86
Transcription
36
DNA accessibility
6
3D chromatin structure
Target of assay
196
histone
196
histone modification
141
narrow histone mark
55
broad histone mark
43
control
35
transcription factor
7
recombinant protein
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
284
bam
240
bigWig
219
bed narrowPeak
100
bigBed narrowPeak
76
fastq
49
tagAlign
19
zippedFastqFolder
16
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
408
Homo sapiens
Biosample type
249
tissue
93
primary cell
58
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
54
epithelium
47
blood vessel
47
vasculature
42
nerve
37
pancreas
30
kidney
27
blood
27
bodily fluid
26
artery
21
eye
21
vein
8
heart
8
liver
7
spleen
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
349
AMP
59
HPAP
Genome assembly (visualization)
247
hg19
240
GRCh38
Lab
349
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
23
inconsistent ontology term
1
audit script error
1
inconsistent control
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
408 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
spleen
7
+ See 79 more…
primary cell
Langerhans cell
40
endothelial cell of umbilical vein
17
2
1
1
pancreatic alpha cell
15
2
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
+ See 4 more…
cell line
GM12878
27
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
+ See 2 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
See all biosamples
Download