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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
47
single cell RNA-seq
30
total RNA-seq
22
ATAC-seq
10
DNase-seq
6
Hi-C
4
pCHi-C
1
FAIRE-seq
Assay category
276
DNA binding
77
Transcription
33
DNA accessibility
6
3D chromatin structure
Target of assay
196
histone
196
histone modification
141
narrow histone mark
55
broad histone mark
43
control
35
transcription factor
7
recombinant protein
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
284
bam
237
bigWig
219
bed narrowPeak
100
bigBed narrowPeak
49
tagAlign
35
fastq
16
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
396
Homo sapiens
Biosample type
296
tissue
58
cell line
34
primary cell
8
in vitro differentiated cells
Organ
86
brain
77
kidney
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
27
blood
27
bodily fluid
26
artery
21
eye
21
vein
18
pancreas
8
heart
8
liver
7
spleen
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
349
AMP
47
KPMP
Genome assembly (visualization)
247
hg19
237
GRCh38
Lab
349
AMP-T2D consortium
47
KPMP
Audit category:
23
inconsistent ontology term
1
audit script error
1
inconsistent control
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
396 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
13
4
kidney
4
47
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
+ See 79 more…
cell line
GM12878
27
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
+ See 1 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
See all biosamples
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