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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
5
GRO-seq
4
Hi-C
3
ATAC-seq
1
MPRA
Assay category
34
DNA binding
4
3D chromatin structure
3
DNA accessibility
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
40
fastq
38
bigWig
34
bam
30
bed narrowPeak
30
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
46
Homo sapiens
Biosample type
30
cell line
9
tissue
4
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
28
blood
28
bodily fluid
7
spleen
3
epithelium
3
pancreas
1
adipose tissue
1
connective tissue
1
embryo
1
liver
1
musculature of body
Project
44
AMP
3
HPAP
Genome assembly (visualization)
36
hg19
30
GRCh38
5
hg18
Lab
44
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
47 results
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Clear Filters
ChIP-seq
GRO-seq
Hi-C
ATAC-seq
MPRA
cell line
GM12878
27
1
HepG2
1
MIN6
1
tissue
spleen
7
adipose tissue
1
skeletal muscle tissue
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
stem cell
hESC
1
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