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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
ATAC-seq
1
Hi-C
Assay category
56
Transcription
40
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
10
control
2
RNA binding protein
2
chromatin remodeller
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
79
fastq
40
bam
30
bed narrowPeak
30
bigBed narrowPeak
30
bigWig
19
zippedFastqFolder
2
bed bed3+
Organism
97
Homo sapiens
Biosample type
56
primary cell
28
cell line
13
tissue
Organ
27
blood
27
bodily fluid
22
pancreas
16
epithelium
7
spleen
1
liver
Project
56
HPAP
41
AMP
Genome assembly (visualization)
32
GRCh38
32
hg19
Lab
56
Klaus Kaestner, Upenn
41
AMP-T2D consortium
Audit category:
1
inconsistent control
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
97 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
pancreatic beta cell
1
cell line
GM12878
27
HepG2
1
tissue
spleen
7
islet of Langerhans
6
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