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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
5
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
30
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
control
5
nucleotide modification
2
RNA binding protein
2
chromatin remodeller
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
36
bam
35
bigWig
32
bed narrowPeak
31
bigBed narrowPeak
31
fastq
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
42
Homo sapiens
Biosample type
31
cell line
6
primary cell
5
tissue
Organ
27
blood
27
bodily fluid
6
connective tissue
5
pancreas
3
epithelium
3
spleen
1
liver
Project
42
AMP
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
37
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
1
inconsistent control
target.investigated_as!
control
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
GM12878
27
EndoC_BH1
3
HepG2
1
primary cell
osteoblast
4
1
1
tissue
spleen
3
islet of Langerhans
2
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