Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
single cell RNA-seq
76
ATAC-seq
62
total RNA-seq
25
ChIP-seq
6
snATAC-seq
3
RNA microarray
2
Capture-C
2
Hi-C
Assay category
171
Transcription
82
DNA accessibility
25
DNA binding
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
115
tsv
92
bed narrowPeak
64
xls
57
txt
46
bam
30
bigWig
24
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
284
Homo sapiens
Biosample type
232
tissue
cell line
44
in vitro differentiated cells
9
primary cell
Organ
131
kidney
92
heart
10
epithelium
9
liver
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
285
AMP
Genome assembly (visualization)
102
GRCh38
42
hg19
Lab
151
AMP-T2D consortium
128
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
Audit category:
4
audit script error
2
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
285 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
RNA microarray
Capture-C
Hi-C
tissue
kidney
9
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
cardiomyocytes (cardiac muscle cell)
2
osteoblast
1
1
primary cell
hepatocyte
5
4
See all biosamples
Download