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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
98
total RNA-seq
34
ChIP-seq
4
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
RNA microarray
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
105
DNA accessibility
102
Transcription
34
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
111
fastq
95
bed narrowPeak
39
bam
38
bigWig
30
bigBed narrowPeak
25
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
Organism
249
Homo sapiens
Biosample type
105
tissue
93
primary cell
34
cell line
18
in vitro differentiated cells
Organ
58
epithelium
56
pancreas
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
27
blood
27
bodily fluid
14
connective tissue
8
bone element
8
skeleton
7
spleen
6
liver
3
kidney
1
adipose tissue
1
brain
Project
151
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
80
hg19
70
GRCh38
Lab
148
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
4
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
250 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
RNA microarray
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
spleen
7
+ See 10 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
hepatocyte
5
gabaergic neuron
3
+ See 3 more…
cell line
GM12878
27
EndoC_BH1
3
2
1
HepG2
1
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
cardiomyocytes (cardiac muscle cell)
2
preadipocyte
1
1
+ See 3 more…
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