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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
555
total RNA-seq
86
RNA microarray
33
ChIP-seq
27
snATAC-seq
22
ATAC-seq
21
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
576
Transcription
49
DNA accessibility
33
DNA binding
6
DNA methylation
Target of assay
19
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
607
bam
582
bigWig
573
tsv
89
txt
75
fastq
44
bed narrowPeak
21
bigBed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
755
Homo sapiens
Biosample type
555
tissue
119
cell line
53
primary cell
28
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
38
epithelium
32
pancreas
18
blood
18
bodily fluid
13
liver
11
kidney
8
skeleton
7
spleen
6
limb
Project
710
AMP
45
HPAP
Genome assembly (visualization)
605
hg19
599
GRCh38
Lab
710
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
130
inconsistent ontology term
36
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
755 results
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total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
6
+ See 16 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
GM12878
18
HepG2
5
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
hepatocyte
5
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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