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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
10
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
94
DNA binding
13
Transcription
Target of assay
56
transcription factor
38
histone
38
histone modification
control
19
broad histone mark
19
narrow histone mark
10
RNA binding protein
9
chromatin remodeller
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
104
bam
103
bigWig
99
fastq
93
bed narrowPeak
71
bigBed narrowPeak
14
tsv
10
bed bed3+
Organism
109
Homo sapiens
Biosample type
45
tissue
37
in vitro differentiated cells
20
cell line
5
primary cell
2
stem cell
Organ
60
liver
22
epithelium
15
blood
15
bodily fluid
9
embryo
6
spleen
3
kidney
Project
109
AMP
Genome assembly (visualization)
103
GRCh38
103
hg19
Lab
109
AMP-T2D consortium
Audit category:
27
inconsistent control
4
audit script error
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
liver
29
right lobe of liver
7
spleen
6
kidney
1
kidney interstitium
1
+ See 1 more…
in vitro differentiated cells
hepatocyte
14
pancreatic endoderm
7
Posterior foregut
4
definitive endodermal cell
4
primitive gut cell
4
+ See 2 more…
cell line
GM12878
15
HepG2
5
primary cell
hepatocyte
5
stem cell
hESC
2
See all biosamples
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