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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
52
single cell RNA-seq
11
ATAC-seq
2
RNA microarray
Assay category
177
Transcription
11
DNA accessibility
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
171
tsv
167
bam
167
bigWig
48
fastq
Organism
190
Homo sapiens
Biosample type
137
tissue
51
primary cell
2
in vitro differentiated cells
Organ
157
pancreas
39
epithelium
17
kidney
5
liver
connective tissue
1
adipose tissue
Project
190
AMP
Genome assembly (visualization)
178
GRCh38
167
hg19
Lab
176
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
4
audit script error
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
190 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
RNA microarray
tissue
islet of Langerhans
120
kidney
4
11
kidney interstitium
1
renal glomerulus
1
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
hepatocyte
5
pancreatic acinar cell
5
pancreatic delta cell
4
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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