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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
25
total RNA-seq
13
ChIP-seq
3
Hi-C
3
single cell RNA-seq
2
RNA microarray
Assay category
30
DNA accessibility
28
Transcription
13
DNA binding
3
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
65
bam
37
bed narrowPeak
36
bigWig
29
tsv
3
hic
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
Organism
76
Homo sapiens
Biosample type
48
tissue
16
cell line
7
in vitro differentiated cells
5
primary cell
Organ
60
pancreas
22
epithelium
5
liver
3
kidney
1
adipose tissue
1
connective tissue
Project
76
AMP
Genome assembly (visualization)
67
hg19
64
GRCh38
Lab
71
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
24
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
RNA microarray
tissue
islet of Langerhans
23
19
2
adipose tissue(adipose white tissue)
1
kidney
1
kidney interstitium
1
renal glomerulus
1
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
2
primary cell
hepatocyte
5
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