Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
98
total RNA-seq
4
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
RNA microarray
2
snATAC-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
106
Transcription
105
DNA accessibility
1
3D chromatin structure
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
76
fastq
65
bed narrowPeak
25
tsv
10
bed bed3
8
bigWig
7
txt
5
bam
4
bed bed3+
3
bed bedgraph
1
hic
Organism
215
Homo sapiens
Biosample type
98
tissue
94
primary cell
18
in vitro differentiated cells
8
cell line
2
stem cell
Organ
58
epithelium
56
pancreas
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
5
liver
3
kidney
1
adipose tissue
1
brain
Project
116
AMP
76
HPAP
23
T1D
4
community
1
ITG
Genome assembly (visualization)
50
hg19
41
GRCh38
Lab
113
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
1
ITG
Audit category:
13
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
220 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
RNA microarray
snATAC-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 9 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
hepatocyte
5
gabaergic neuron
3
+ See 4 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
cardiomyocytes (cardiac muscle cell)
2
preadipocyte
1
1
+ See 3 more…
cell line
EndoC_BH1
3
2
1
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download