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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
10
MeRIP-seq
10
total RNA-seq
6
single cell RNA-seq
2
RNA microarray
1
DNase-seq
Assay category
16
Transcription
13
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
13
tsv
11
bam
10
bigWig
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
41
Homo sapiens
Biosample type
22
tissue
11
primary cell
6
cell line
2
in vitro differentiated cells
Organ
17
kidney
12
epithelium
10
pancreas
7
connective tissue
5
liver
1
adipose tissue
Project
41
AMP
Genome assembly (visualization)
23
GRCh38
12
hg19
Lab
17
AMP-T2D consortium
14
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ATAC-seq
MeRIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
DNase-seq
tissue
kidney
11
4
islet of Langerhans
4
adipose tissue
1
kidney interstitium
1
renal glomerulus
1
primary cell
osteoblast
1
4
1
hepatocyte
5
cell line
EndoC_BH1
6
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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