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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
11
ATAC-seq
8
total RNA-seq
6
single cell RNA-seq
2
RNA microarray
Assay category
194
DNA binding
14
Transcription
11
DNA accessibility
Target of assay
122
histone
122
histone modification
77
broad histone mark
52
control
45
narrow histone mark
20
transcription factor
16
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
201
bam
149
bigWig
142
bed narrowPeak
142
bigBed narrowPeak
60
fastq
11
tsv
Organism
221
Homo sapiens
Biosample type
207
tissue
12
primary cell
2
in vitro differentiated cells
Organ
55
pancreas
50
blood vessel
50
vasculature
28
brain
24
adipose tissue
24
connective tissue
22
kidney
21
heart
13
epithelium
7
limb
7
musculature of body
5
artery
5
liver
Project
221
AMP
Genome assembly (visualization)
160
GRCh38
150
hg19
Lab
207
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
body of pancreas
35
ascending aorta
16
endocrine pancreas
16
thoracic aorta
16
kidney
11
4
+ See 14 more…
primary cell
hepatocyte
5
kidney epithelial cell
5
pancreatic acinar cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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