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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
single cell RNA-seq
22
total RNA-seq
14
ATAC-seq
2
RNA microarray
Assay category
68
Transcription
14
DNA accessibility
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
41
fastq
19
zippedFastqFolder
9
tsv
8
bigWig
5
bam
Organism
84
Homo sapiens
Biosample type
64
primary cell
18
tissue
2
in vitro differentiated cells
Organ
25
epithelium
19
pancreas
17
kidney
5
liver
1
adipose tissue
1
connective tissue
Project
59
HPAP
25
AMP
Genome assembly (visualization)
20
GRCh38
6
hg19
Lab
59
Klaus Kaestner, Upenn
14
Katalin Susztak, Upenn
11
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
84 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
hepatocyte
5
pancreatic beta cell
1
1
tissue
kidney
4
11
adipose tissue
1
kidney interstitium
1
renal glomerulus
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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