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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
total RNA-seq
31
ChIP-seq
9
ATAC-seq
2
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
82
Transcription
31
DNA binding
11
DNA accessibility
1
3D chromatin structure
Target of assay
12
control
12
transcription factor
7
histone
7
histone modification
7
recombinant protein
4
broad histone mark
3
narrow histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
124
bam
103
bigWig
82
tsv
29
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
3
bed bed3+
1
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
126
Homo sapiens
Biosample type
787
tissue
126
cell line
82
primary cell
34
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
41
pancreas
28
epithelium
15
kidney
2
liver
Project
126
AMP
Genome assembly (visualization)
113
hg19
112
GRCh38
Lab
126
AMP-T2D consortium
Audit category:
39
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
126 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
Panc1
13
1
1
RCC 7860 HIF1a re-expression
1
4
RCC 7860 HIF2a over-expression
1
3
RCC 7860 vector
1
3
HepG2
1
1
glomerular visceral epithelial cell
1
1
iPSC derived cell line
2
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