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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
total RNA-seq
195
ChIP-seq
84
RNA microarray
24
ATAC-seq
6
single cell RNA-seq
4
DNase-seq
4
pCHi-C
3
snDrop-seq
1
Hi-C
Assay category
472
Transcription
195
DNA binding
28
DNA accessibility
1
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
638
bam
604
bigWig
460
tsv
159
bed narrowPeak
89
txt
49
tagAlign
47
bigBed narrowPeak
6
csv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
787
Homo sapiens
Biosample type
787
tissue
126
cell line
82
primary cell
34
in vitro differentiated cells
Organ
446
connective tissue
387
adipose tissue
150
bone element
86
brain
75
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
12
kidney
8
heart
8
skeleton
7
liver
4
gonad
4
ovary
3
pancreas
2
pituitary gland
1
lymph node
1
skin of body
Project
787
AMP
Genome assembly (visualization)
615
hg19
613
GRCh38
Lab
787
AMP-T2D consortium
Audit category:
86
inconsistent ontology term
5
audit script error
BIOSAMPLE
ASSAY
787 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
snDrop-seq
Hi-C
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
14
21
13
4
tibial nerve
4
35
1
2
tibial artery
23
1
2
kidney
4
5
heart
2
5
1
liver
1
5
1
brain
1
5
superior frontal gyrus
4
central medial thalamic nucleus
3
middle temporal gyrus
3
visceral abdominal adipose tissue
3
angular gyrus
2
anterior cingulate gyrus
2
cerebellum (Hemisphere)
2
gyrus rectus
2
medial globus pallidus
2
middle frontal gyrus
2
occipital pole
2
posterior cingulate gyrus
2
precuneus cortex
2
primary motor cortex
2
putamen
2
secondary auditory cortex
2
subcutaneous adipose tissue
2
superior parietal cortex
2
supramarginal gyrus
2
white matter
2
agranular insular cortex
1
amygdala
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
body of caudate nucleus
1
brodmann area 43
1
claustrum of brain
1
cuneus
1
dentate nucleus
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dorsal plus ventral thalamus
1
external globus pallidus
1
fastigial nucleus
1
frontal pole
1
head of caudate nucleus
1
hippocampal gyrus
1
hypothalamus
1
inferior frontal gyrus
1
inferior temporal gyrus
1
insular gyrus
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
lateral hypothalamic area
1
lateral occipital gyrus
1
lateral septal nucleus
1
layer of hippocampus
1
lingual gyrus
1
locus coeruleus
1
mammillary body
1
medial dorsal nucleus of thalamus
1
medial geniculate nucleus
1
medial segment of precentral gyrus
1
midbrain tectum
1
myelencephalon
1
nucleus accumbens
1
olivary body
1
orbital gyrus
1
paraterminal gyrus
1
pineal body
1
piriform cortex
1
pituitary gland
1
planum polare
1
planum temporale
1
pons
1
postcentral gyrus
1
primary somatosensory cortex
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
subiculum
1
substantia nigra
1
substantia nigra pars reticulata
1
subthalamic nucleus
1
superior occipital gyrus
1
suprachiasmatic nucleus
1
temporal pole
1
transverse temporal gyrus
1
uncus of parahippocampal gyrus
1
ventral anterior nucleus of thalamus
1
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