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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ATAC-seq
16
ChIP-seq
15
total RNA-seq
Assay category
45
DNA accessibility
16
DNA binding
15
Transcription
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
46
bed narrowPeak
34
bigWig
31
bam
31
fastq
15
tsv
10
bed bed3
4
bed bed3+
3
bed bedgraph
3
txt
Organism
76
Homo sapiens
Biosample type
43
in vitro differentiated cells
33
tissue
Organ
27
eye
12
epithelium
10
connective tissue
10
embryo
4
bone element
4
skeleton
1
adipose tissue
1
brain
Project
76
AMP
Genome assembly (visualization)
76
hg19
66
GRCh38
Lab
73
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
December, 2018
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
6
4
chondrocyte
5
embryonic stem cell
1
2
2
definitive endodermal cell
2
2
endocrine cell
2
2
+ See 8 more…
tissue
retina
15
pigmented layer of retina
12
acetabular part of hip bone
1
adipose tissue
1
brain
1
+ See 3 more…
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