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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
30
total RNA-seq
27
ChIP-seq
10
Hi-C
4
ATAC-seq
Assay category
30
Transcription
27
DNA binding
10
3D chromatin structure
4
DNA accessibility
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
60
tsv
55
bam
51
bigWig
39
fastq
19
bed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
Organism
103
Homo sapiens
Biosample type
47
in vitro differentiated cells
40
tissue
11
cell line
4
stem cell
1
primary cell
Organ
14
pancreas
13
embryo
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
96
AMP
7
T1D
Genome assembly (visualization)
63
hg19
47
GRCh38
Lab
103
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
103 results
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Clear Filters
pCHi-C
total RNA-seq
ChIP-seq
Hi-C
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
4
9
embryonic stem cell
1
2
3
definitive endodermal cell
2
3
endocrine cell
2
3
posterior foregut
2
3
+ See 4 more…
tissue
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
1
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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