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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
46
ChIP-seq
2
Hi-C
Assay category
76
DNA accessibility
46
DNA binding
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
19
narrow histone mark
16
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
313
November, 2017
210
June, 2019
192
October, 2019
142
August, 2017
133
May, 2021
108
August, 2021
97
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2022
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
15
March, 2020
12
October, 2017
7
July, 2019
5
September, 2017
3
October, 2022
2
November, 2020
1
August, 2018
Available data
138
tsv
122
bed narrowPeak
88
bam
78
bigWig
64
xls
57
txt
39
fastq
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
124
Homo sapiens
Biosample type
65
tissue
41
in vitro differentiated cells
15
cell line
3
primary cell
Organ
64
kidney
18
liver
6
embryo
3
epithelium
2
connective tissue
1
pancreas
Project
124
AMP
Genome assembly (visualization)
106
GRCh38
58
hg19
Lab
64
Katalin Susztak, Upenn
42
AMP-T2D consortium
16
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
124 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
tissue
kidney
64
islet of Langerhans
1
in vitro differentiated cells
neural progenitor cell
10
13
pancreatic endoderm
6
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
+ See 4 more…
cell line
HepG2
14
1
primary cell
hepatocyte
3
See all biosamples
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