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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
32
pCHi-C
27
ChIP-seq
10
Hi-C
4
ATAC-seq
Assay category
55
Transcription
27
DNA binding
10
3D chromatin structure
4
DNA accessibility
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
85
tsv
55
bam
51
bigWig
39
fastq
19
bed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
Organism
128
Homo sapiens
Biosample type
65
tissue
47
in vitro differentiated cells
11
cell line
4
stem cell
1
primary cell
Organ
15
pancreas
14
brain
13
embryo
10
heart
7
blood vessel
7
musculature of body
7
vasculature
6
epithelium
4
connective tissue
4
liver
3
adipose tissue
3
limb
2
artery
2
intestine
2
kidney
1
adrenal gland
1
esophagus
1
eye
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
121
AMP
7
T1D
Genome assembly (visualization)
63
hg19
47
GRCh38
Lab
128
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
128 results
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Clear Filters
total RNA-seq
pCHi-C
ChIP-seq
Hi-C
ATAC-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 40 more…
in vitro differentiated cells
pancreatic endoderm
4
9
embryonic stem cell
2
1
3
definitive endodermal cell
2
3
endocrine cell
2
3
posterior foregut
2
3
+ See 4 more…
cell line
EndoC_BH1
2
1
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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