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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
20
total RNA-seq
11
ATAC-seq
3
single cell RNA-seq
Assay category
49
DNA binding
23
Transcription
11
DNA accessibility
Target of assay
23
histone
23
histone modification
14
transcription factor
12
broad histone mark
12
control
11
narrow histone mark
6
RNA binding protein
6
chromatin remodeller
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
69
bam
69
fastq
57
bigWig
37
bed narrowPeak
21
bigBed narrowPeak
20
tsv
Organism
83
Homo sapiens
Biosample type
39
in vitro differentiated cells
23
cell line
21
tissue
Organ
18
blood
18
bodily fluid
14
kidney
13
embryo
7
spleen
5
liver
1
adipose tissue
connective tissue
Project
83
AMP
Genome assembly (visualization)
68
GRCh38
57
hg19
Lab
69
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
2
inconsistent control read length
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
cell line
GM12878
18
HepG2
5
tissue
kidney
11
3
spleen
7
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