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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
16
snATAC-seq
15
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
24
DNA binding
19
Transcription
16
DNA accessibility
1
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
39
bam
39
fastq
31
bigWig
16
bed narrowPeak
15
tsv
1
hic
Organism
56
Homo sapiens
Biosample type
39
in vitro differentiated cells
9
primary cell
8
tissue
2
cell line
2
stem cell
Organ
13
embryo
8
blood
8
bodily fluid
8
pancreas
Project
39
AMP
16
T1D
4
community
1
ITG
Genome assembly (visualization)
32
GRCh38
31
hg19
Lab
39
AMP-T2D consortium
16
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
60 results
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Clear Filters
ChIP-seq
snATAC-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
primary cell
peripheral blood mononuclear cell
8
chondrocytes
1
tissue
islet of Langerhans
4
pancreas
4
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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