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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
15
total RNA-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
94
DNA binding
16
Transcription
7
DNA methylation
1
DNA accessibility
Target of assay
64
transcription factor
21
RNA binding protein
16
histone
16
histone modification
16
recombinant protein
14
control
8
broad histone mark
8
narrow histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
127
fastq
126
bam
111
bigWig
89
bed narrowPeak
73
bigBed narrowPeak
15
tsv
9
bed bed3+
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
118
Homo sapiens
Biosample type
61
cell line
39
in vitro differentiated cells
17
tissue
1
primary cell
Organ
50
liver
15
blood
15
bodily fluid
13
embryo
8
spleen
5
pancreas
Project
118
AMP
Genome assembly (visualization)
101
GRCh38
93
hg19
Lab
118
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
tissue
spleen
6
2
liver
4
pancreas
2
1
body of pancreas
2
primary cell
pancreatic cell
1
See all biosamples
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